ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

Author: Kigaramar Goltishicage
Country: Azerbaijan
Language: English (Spanish)
Genre: Health and Food
Published (Last): 2 May 2007
Pages: 456
PDF File Size: 4.7 Mb
ePub File Size: 8.70 Mb
ISBN: 828-6-45924-410-9
Downloads: 63844
Price: Free* [*Free Regsitration Required]
Uploader: Vudodal

This tutorial will help people who are getting started on next-gen sequencing get an idea of the tools, flows, and procedures that they may need to set ecfb to handle this data. It coordinates, integrates and sustains bioinformatics resources across its member states, enabling users in academia and industry to access vital data, tools, standards, compute and training services for research.

Jan Aerts received his PhD at Wageningen University Netherlands in on the subject of chicken genome mapping and sequencing. Friday, 01 April We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre sponsoring the Poster Award. All efcb research papers that had been published in peer-review journals between 1 March,and the submission deadline of 29 Marchwere eligible to be presented as a Highlight talk.

Recent data obtained by high-throughput experiments accelerate the genome-wide identification of regulatory elements but also provide additional bioinformatics challenges.

Presenters

Introduction to short read alignment algorithms and tools Practical instructions and examples on use of short read aligners Parallelising short read alignment Introduction to sequence assembly methods and tools Practical instructions on use of short read assembly tools to get the optimal sequence assembly. Within each theme, the theme co-chairs assigned papers to expert referees, taking care to avoid any conflict of interest.

Submissions to the Poster Track were evaluated based on a word abstract and will be shown at the conference along the five main conference themes. We are grateful to the ECCB steering committee for their support and contribution to the organization of the conference. Inhe co-founded the Vertebrate Resequencing Informatics group and manages the sequencing, informatics, and variation pipelines for large projects such as the genomes http: Consequently, submissions relating to pure research were deemed out of scope.

These rankings were subsequently used to assign papers to themes and to arrive at an optimally balanced distribution of submissions over the themes. To present a more unified view of where the science has gone over recent years, new to ECCB this year is that the conference presentations are divided over five broad themes: The ECCB science has been in the able hands of the following individuals, whose painstaking efforts have been vital: Citing articles via Web of Science 1.

  LIBRO MI COCINA ARMANDO SCANNONE PDF

Today’s software and CPU time availability on clusters, super computers, and the grid allow for easy improvement of old files. Use of semantic web resources in computational biology and bioinformatics Tutorial 3: The 14 workshops preceding the ECCB main meeting were selected out of a total of 29 applications, showing how popular ECCB has become as a venue for dissemination of computational biology research.

The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

Friday, 01 April Receive exclusive offers and updates from Oxford Academic. This year four different tracks were created for ECCB: The Semantic Web is a set of technologies, or a framework, which is designed to make data integration possible nezt-gen the web, with the addition of a precise semantic characterization of entities and relations ontologies.

Next generation sequencing

Related articles in Web of Science Google Scholar. We thank all those who provided financial support to the conference. Close mobile search navigation Article navigation.

It furthers the University’s objective of excellence in research, scholarship, and education by publishing worldwide. The reviewing and selection process was carried out using the EasyChair multi-track conference reviewing system www.

In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some sequdncing quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants sequsncing a reference sequence.

They will be presenting the latest scientific literature in the field of computational biology, bioinformatics, data stewardship, modeling and simulation, as tutoriwl as new hardware, software and technology developments. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some seqquencing quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

Sponsored Talks enable sponsors to showcase their innovations in computational biology and to highlight their scientific value. Discovery of statistically significant post-translational modification motifs. Together, the Programme Committee PC was composed of reviewers and 35 next-gej.

  KABIR SAKHI SANGRAH PDF

Essentially, these efforts contribute to the success and reputation of the ECCB conference! In the light of these developments, this tutorial will focus on bioinformatics methods to predict cis-regulatory elements and to aid the process of regulatory annotation.

The annotation of the non-coding genome with gene regulatory function is lagging far behind the annotation of protein-coding genes and improved annotation will depend both on deeper biological insight into cis-regulatory logic and on more efficient computational prediction algorithms.

Many people contributed to the local organization of the conference, often much beyond the call of duty, and we owe them a great debt, in particular Femke Francissen and Jacintha van Beemen, both at the Dutch Techcentre for Life Sciences DTL for their relentless logistic and organizational support.

We believe that for all of the rejected submissions, the reviewers provided high-quality reports. The Applications Track features 11 presentations, which were selected out of 31 submissions. It offers sequencimg an opportunity to learn about new tugorial of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas about which they are already familiar.

ECCB The 15th European Conference on Computational Biology | Bioinformatics | Oxford Academic

Email alerts New issue alert. The conference topics span all areas of methodological developments for computational biology and innovative applications of computational methods to molecular biology and biomedicine. Following the call for Proceedings papers, we received submissions. Recent advances in homology modelling and drug design have made clear that the quality of protein structures is really imnportant for good results. The review form explicitly differentiated between impact and suitability for ECCB on the one hand, and scientific quality and reproducibility on the other.

Working with next-generation sequencing data Tutorial 2: New challenges are now emerging in these fields with the recent advances in low-cost ultra-fast sequencing, bio-imaging and big data.

In recent years, there has been a revolution in the area of DNA sequencing nedt-gen the arrival of next-generation sequencing technologies. In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

BioinformaticsVolume 32, Issue 17, 1 SeptemberPages i—i, https: Ruben Kok Dutch Techcentre for Life Sciences had a decisive role in the Local Steering Committee, while Celia van Gelder is thanked once more for her support also in organisational matters.